37 lines
1.7 KiB
Python
37 lines
1.7 KiB
Python
import torch
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import torch.nn.functional as F
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import numpy as np
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from scipy.ndimage import gaussian_filter1d
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def gauss_smooth(inputs, device, smooth_kernel_std=2, smooth_kernel_size=100, padding='same'):
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"""
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Applies a 1D Gaussian smoothing operation with PyTorch to smooth the data along the time axis.
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Args:
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inputs (tensor : B x T x N): A 3D tensor with batch size B, time steps T, and number of features N.
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Assumed to already be on the correct device (e.g., GPU).
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kernelSD (float): Standard deviation of the Gaussian smoothing kernel.
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padding (str): Padding mode, either 'same' or 'valid'.
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device (str): Device to use for computation (e.g., 'cuda' or 'cpu').
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Returns:
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smoothed (tensor : B x T x N): A smoothed 3D tensor with batch size B, time steps T, and number of features N.
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"""
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# Get Gaussian kernel
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inp = np.zeros(smooth_kernel_size, dtype=np.float32)
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inp[smooth_kernel_size // 2] = 1
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gaussKernel = gaussian_filter1d(inp, smooth_kernel_std)
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validIdx = np.argwhere(gaussKernel > 0.01)
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gaussKernel = gaussKernel[validIdx]
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gaussKernel = np.squeeze(gaussKernel / np.sum(gaussKernel))
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# Convert to tensor
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gaussKernel = torch.tensor(gaussKernel, dtype=torch.float32, device=device)
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gaussKernel = gaussKernel.view(1, 1, -1) # [1, 1, kernel_size]
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# Prepare convolution
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B, T, C = inputs.shape
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inputs = inputs.permute(0, 2, 1) # [B, C, T]
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gaussKernel = gaussKernel.repeat(C, 1, 1) # [C, 1, kernel_size]
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# Perform convolution
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smoothed = F.conv1d(inputs, gaussKernel, padding=padding, groups=C)
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return smoothed.permute(0, 2, 1) # [B, T, C] |